PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472748
Common NameARALYDRAFT_472748
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 450aa    MW: 50539.7 Da    PI: 9.5095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472748genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0005994114323
              ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
              C  Cgk F ++  L  H+ +H
   472748  94 CRECGKGFVSSKALCGHMASH 114
              99*****************99 PP

2zf-C2H211.80.00074396418123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+C ++F++   L  H r+H
   472748 396 HECPICFRVFKSGQALGGHKRSH 418
              79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-5534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-6535No hitNo description
PfamPF139121.1E-5932IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094936IPR007087Zinc finger, C2H2
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.55492119IPR007087Zinc finger, C2H2
SMARTSM003550.06892114IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-493116IPR007087Zinc finger, C2H2
SuperFamilySSF576674.87E-793114No hitNo description
PROSITE patternPS00028093114IPR007087Zinc finger, C2H2
SuperFamilySSF576674.87E-7391418No hitNo description
PfamPF139123.8E-10396418IPR007087Zinc finger, C2H2
SMARTSM003550.14396418IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974396418IPR007087Zinc finger, C2H2
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEQLKERRFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDEANKLKMI DENGGQSSYG  60
LRENPKKNKR FVDHRQMMAL KQQQQQQLQQ LLCCRECGKG FVSSKALCGH MASHSEREKI  120
VMDSQSDTEA SSSPIRRRSK RVVVKHHHKD AFVVGGNGIM NQSISASSDA SEIEPEQEEM  180
ARSLMMLSRD SSFKKEHNSL AESSDNNSVI LETKSSSGEQ LKMFNVKNVE EYCKKNKLVV  240
DNQMKAGEDN GDVLYDSDNS DSGYFRNGPK KLDSDVSVDG FFRNKAVMGS GSGFNSSPTK  300
QNMNMNRFKK EWYKEGGSGS GSGRSSTKYD LRNSKRGFPS YGRKKIKYEF TESVYDSGEH  360
SLETDSCADT NRTIKIHSKS AMVNKASGAK KKNKGHECPI CFRVFKSGQA LGGHKRSHFI  420
GNQEHRTLVI QHQVSHEMHT LIDLNLPAPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934800.0AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893392.10.0zinc finger family protein, partial
TrEMBLD7KQN70.0D7KQN7_ARALL; Zinc finger family protein (Fragment)
STRINGfgenesh2_kg.1__2702__AT1G26610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein